BC bio-chipseq-motif-analysis
De novo motif discovery and known motif enrichment analysis using HOMER and MEME-ChIP. Identify transcription factor binding motifs in ChIP-seq, ATAC-seq, or other genomic peak data. Use when finding enriched DNA motifs in peak sequences.
De novo motif discovery and known motif enrichment analysis using HOMER and MEME-ChIP.
As a process C 57/100 · Has gaps — weak spots: when it triggers, inputs and preconditions, running it twice
How to improve
- Your own cases (evals/evals.json, 4–6 real requests with expected answers): the full check would then run those instead of a model-drafted suite.
- A spec.yaml with trigger phrases and assertions — a behaviour contract for CI; `skilltest init` writes a template.
Guard findings · 0
✓ No critical or high findings
Files scanned: 3. Evidence is masked. Grey chips explain why severity was lowered.
Against the Agent Skills spec
- note
frontmatter-keyunknown frontmatter key "tool_type" - note
frontmatter-keyunknown frontmatter key "primary_tool"
Process rating: all ten parameters 57/100
- 0Inputs and preconditions. Does not say what the process needs to start
- 0Progress reporting. Says nothing while it works
- 20When it triggers. No condition that starts the skill
- 30Running it twice. 1 mutating operations with no state check
- 50Failures and branches. 0 branches, has a failure section
- 60Tools and files. Uses tools (python) that frontmatter does not declare
- 60Result and completion. Output format stated, no completion criterion
- 100Steps. 22 steps
- 100Consistency. Name and required fields are in place
- 100Execution cost. Instruction body is 2532 tokens
- low 12 top-level sections: this looks like several domains in one skill
- low The response is described with custom markup (4 tags): a typed call is more reliable
Everything here is measured from the skill text rather than judged by a model, so the numbers are checkable. A parameter weighs more when it is a more common reason for the process to stall.
Quality signals
- +5Description has no quoted example phrases that should trigger the skill
- +4Description does not say when NOT to use the skill (false activations)
- +1No license
- +2Single-language instructions
- +3Description length 238: enough signal without eating the budget
- +4Structure: 40 headings
- +3Step-by-step instructions: 22 items
- +3Output format is stated explicitly
- +4Has examples (24 code blocks)
Quality base 70; lint remarks subtract, signals add up to 100. Result: 85.