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FD biomni-general-agent

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FreedomIntelligence/OpenClaw-Medical-Skills Agent Skills author: FreedomIntelligence 80 files · 66 scripts body ≈ 470 tokens Open the sourcegithub.com↗ analyzed 12 h ago

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As a process D 46/100 · Unfinished process — weak spots: result and completion, when it triggers, inputs and preconditions

ProcedureAI and agentsSoftware developmenttype and topics are labelled automatically from the skill text
Runs in: Claude / Claude Code ChatGPT / Codex Gemini CLI Cursor GitHub Copilot / VS Code Qwen Code Kimi Code CLI Z.ai (GLM) DeepSeek (Deep Code) Mistral Vibe LangChain (deepagents) OpenClaw Goose OpenCode
JSON
Technical rating
F
0/100
safety, quality, tests
Safety 60%
0
Quality 40%
0
Run on models
none yet
Process rating
D
46/100
Unfinished process
Result and completion w 14
0
When it triggers w 12
0
Inputs and preconditions w 11
0
the three weakest of ten parameters · all ten

What is at stake

Medium-severity findings: the skill is probably honest, but read what alarmed the scanner.

Dangerous commands medium severity

Below is the worst case for this category. The finding here is medium: the guard saw a sign, not a proof.

If you install

The skill contains commands that delete files, rewrite disks or execute code fetched from the network. The agent may run them without asking if it believes the instructions require it.

For the author

Replace destructive commands with safe equivalents that ask for confirmation, scope them to one folder, and stop piping curl into a shell: pin a version and a checksum.

Exfiltration medium severity

Below is the worst case for this category. The finding here is medium: the guard saw a sign, not a proof.

If you install

The instructions or scripts send data out: environment variables, keys, file contents, chat history. You may never notice, because the agent performs the upload as "part of the task".

For the author

If the upload is not needed for the task, remove it: catalogs flag such skills and delist them. If it is needed, name the destination explicitly, say what leaves the machine, and give the user a switch.

How to improve

  1. Add a description to the frontmatter: without it the skill never triggers.
For the model run — optional
  • Your own cases (evals/evals.json, 4–6 real requests with expected answers): the full check would then run those instead of a model-drafted suite.
  • A spec.yaml with trigger phrases and assertions — a behaviour contract for CI; `skilltest init` writes a template.

Guard findings · 79

✓ No critical or high findings

Medium and low: 79
  • medium Dangerous commands cmd-shell-rc repo/biomni_env/install_cli_tools.sh:817
    Writes to a shell startup file
    echo -e "- .bash_profile (for Bash on macOS/login shells)"
  • medium Dangerous commands cmd-shell-rc repo/biomni_env/install_cli_tools.sh:818
    Writes to a shell startup file
    echo -e "- .bashrc (for Bash on Linux/non-login shells)"
  • medium Dangerous commands cmd-shell-rc repo/biomni_env/install_cli_tools.sh:819
    Writes to a shell startup file
    echo -e "- .zshrc (for Zsh)"
  • medium Dangerous commands cmd-shell-rc repo/biomni_env/install_cli_tools.sh:820
    Writes to a shell startup file
    echo -e "- .config/fish/config.fish (for Fish)"
  • medium Dangerous commands cmd-shell-rc repo/biomni_env/install_cli_tools.sh:821
    Writes to a shell startup file
    echo -e "- .profile (generic)"
  • medium Exfiltration net-redirectable-api-key repo/biomni/config.py:81
    Helper sends the API key to a host configured by an environment variable — the key can be redirected to another server
    API key + configurable base URL from environment
  • low Secrets in code secret-high-entropy-token README.md:54
    High-entropy token-like string (may be an id, hash or a credential) (detector / deny-list definition)
    <!-- AUTHOR_SIGNATURE: 9a7f…URE -->
    detector
  • low Secrets in code secret-high-entropy-token repo/biomni_env/README.md:90
    High-entropy token-like string (may be an id, hash or a credential) (detector / deny-list definition)
    <!-- AUTHOR_SIGNATURE: 9a7f…URE -->
    detector
  • low Secrets in code secret-high-entropy-token repo/biomni/__init__.py:15
    High-entropy token-like string (may be an id, hash or a credential) (detector / deny-list definition)
    __AUTHOR_SIGNATURE__ = "9a7f…URE"
    detector
  • low Secrets in code secret-high-entropy-token repo/biomni/agent/__init__.py:13
    High-entropy token-like string (may be an id, hash or a credential) (detector / deny-list definition)
    __AUTHOR_SIGNATURE__ = "9a7f…URE"
    detector
  • low Secrets in code secret-high-entropy-token repo/biomni/agent/a1.py:3007
    High-entropy token-like string (may be an id, hash or a credential) (detector / deny-list definition)
    __AUTHOR_SIGNATURE__ = "9a7f…URE"
    detector
  • low Secrets in code secret-high-entropy-token repo/biomni/agent/env_collection.py:325
    High-entropy token-like string (may be an id, hash or a credential) (detector / deny-list definition)
    __AUTHOR_SIGNATURE__ = "9a7f…URE"
    detector
  • low Secrets in code secret-high-entropy-token repo/biomni/agent/function_generator.py:131
    High-entropy token-like string (may be an id, hash or a credential) (detector / deny-list definition)
    __AUTHOR_SIGNATURE__ = "9a7f…URE"
    detector
  • low Secrets in code secret-high-entropy-token repo/biomni/agent/qa_llm.py:62
    High-entropy token-like string (may be an id, hash or a credential) (detector / deny-list definition)
    __AUTHOR_SIGNATURE__ = "9a7f…URE"
    detector
  • low Secrets in code secret-high-entropy-token repo/biomni/agent/react.py:477
    High-entropy token-like string (may be an id, hash or a credential) (detector / deny-list definition)
    __AUTHOR_SIGNATURE__ = "9a7f…URE"
    detector
  • low Secrets in code secret-high-entropy-token repo/biomni/biorxiv_scripts/extract_biorxiv_tasks.py:416
    High-entropy token-like string (may be an id, hash or a credential) (detector / deny-list definition)
    __AUTHOR_SIGNATURE__ = "9a7f…URE"
    detector
  • low Secrets in code secret-high-entropy-token repo/biomni/biorxiv_scripts/generate_function.py:84
    High-entropy token-like string (may be an id, hash or a credential) (detector / deny-list definition)
    __AUTHOR_SIGNATURE__ = "9a7f…URE"
    detector
  • low Secrets in code secret-high-entropy-token repo/biomni/biorxiv_scripts/process_all_subjects.py:327
    High-entropy token-like string (may be an id, hash or a credential) (detector / deny-list definition)
    __AUTHOR_SIGNATURE__ = "9a7f…URE"
    detector
  • low Secrets in code secret-high-entropy-token repo/biomni/config.py:111
    High-entropy token-like string (may be an id, hash or a credential) (detector / deny-list definition)
    __AUTHOR_SIGNATURE__ = "9a7f…URE"
    detector
  • low Secrets in code secret-high-entropy-token repo/biomni/env_desc_cm.py:231
    High-entropy token-like string (may be an id, hash or a credential) (detector / deny-list definition)
    __AUTHOR_SIGNATURE__ = "9a7f…URE"
    detector
  • low Secrets in code secret-high-entropy-token repo/biomni/env_desc.py:233
    High-entropy token-like string (may be an id, hash or a credential) (detector / deny-list definition)
    __AUTHOR_SIGNATURE__ = "9a7f…URE"
    detector
  • low Secrets in code secret-high-entropy-token repo/biomni/eval/__init__.py:15
    High-entropy token-like string (may be an id, hash or a credential) (detector / deny-list definition)
    __AUTHOR_SIGNATURE__ = "9a7f…URE"
    detector
  • low Secrets in code secret-high-entropy-token repo/biomni/eval/biomni_eval1.py:336
    High-entropy token-like string (may be an id, hash or a credential) (detector / deny-list definition)
    __AUTHOR_SIGNATURE__ = "9a7f…URE"
    detector
  • low Secrets in code secret-high-entropy-token repo/biomni/know_how/__init__.py:21
    High-entropy token-like string (may be an id, hash or a credential) (detector / deny-list definition)
    __AUTHOR_SIGNATURE__ = "9a7f…URE"
    detector
  • low Secrets in code secret-high-entropy-token repo/biomni/know_how/loader.py:360
    High-entropy token-like string (may be an id, hash or a credential) (detector / deny-list definition)
    __AUTHOR_SIGNATURE__ = "9a7f…URE"
    detector
  • low Secrets in code secret-high-entropy-token repo/biomni/know_how/sgRNA_design_guide.md:193
    High-entropy token-like string (may be an id, hash or a credential) (documentation table row)
    | Human | GRCh38 | SpCas9 | Knockout | `9606…Rko` |
    table
  • low Secrets in code secret-high-entropy-token repo/biomni/know_how/sgRNA_design_guide.md:194
    High-entropy token-like string (may be an id, hash or a credential) (documentation table row)
    | Human | GRCh38 | SpCas9 | Activation | `9606…PRa` |
    table
  • low Secrets in code secret-high-entropy-token repo/biomni/know_how/sgRNA_design_guide.md:195
    High-entropy token-like string (may be an id, hash or a credential) (documentation table row)
    | Human | GRCh38 | SaCas9 | Knockout | `9606…Rko` |
    table
  • low Secrets in code secret-high-entropy-token repo/biomni/know_how/sgRNA_design_guide.md:196
    High-entropy token-like string (may be an id, hash or a credential) (documentation table row)
    | Mouse | GRCm38 | SpCas9 | Knockout | `1009…Rko` |
    table
  • low Secrets in code secret-high-entropy-token repo/biomni/know_how/sgRNA_design_guide.md:197
    High-entropy token-like string (may be an id, hash or a credential) (documentation table row)
    | Mouse | GRCm38 | SpCas9 | Activation | `1009…PRa` |
    table
  • low Secrets in code secret-high-entropy-token repo/biomni/know_how/single_cell_annotation.md:239
    High-entropy token-like string (may be an id, hash or a credential) (detector / deny-list definition)
    <!-- AUTHOR_SIGNATURE: 9a7f…URE -->
    detector
  • low Secrets in code secret-high-entropy-token repo/biomni/llm.py:287
    High-entropy token-like string (may be an id, hash or a credential) (detector / deny-list definition)
    __AUTHOR_SIGNATURE__ = "9a7f…URE"
    detector
  • low Secrets in code secret-high-entropy-token repo/biomni/model/__init__.py:12
    High-entropy token-like string (may be an id, hash or a credential) (detector / deny-list definition)
    __AUTHOR_SIGNATURE__ = "9a7f…URE"
    detector
  • low Secrets in code secret-high-entropy-token repo/biomni/model/retriever.py:215
    High-entropy token-like string (may be an id, hash or a credential) (detector / deny-list definition)
    __AUTHOR_SIGNATURE__ = "9a7f…URE"
    detector
  • low Secrets in code secret-high-entropy-token repo/biomni/task/__init__.py:12
    High-entropy token-like string (may be an id, hash or a credential) (detector / deny-list definition)
    __AUTHOR_SIGNATURE__ = "9a7f…URE"
    detector
  • low Secrets in code secret-high-entropy-token repo/biomni/task/base_task.py:30
    High-entropy token-like string (may be an id, hash or a credential) (detector / deny-list definition)
    __AUTHOR_SIGNATURE__ = "9a7f…URE"
    detector
  • low Secrets in code secret-high-entropy-token repo/biomni/task/hle.py:158
    High-entropy token-like string (may be an id, hash or a credential) (detector / deny-list definition)
    __AUTHOR_SIGNATURE__ = "9a7f…URE"
    detector
  • low Secrets in code secret-high-entropy-token repo/biomni/task/lab_bench.py:127
    High-entropy token-like string (may be an id, hash or a credential) (detector / deny-list definition)
    __AUTHOR_SIGNATURE__ = "9a7f…URE"
    detector
  • low Secrets in code secret-high-entropy-token repo/biomni/tool/__init__.py:13
    High-entropy token-like string (may be an id, hash or a credential) (detector / deny-list definition)
    __AUTHOR_SIGNATURE__ = "9a7f…URE"
    detector
  • low Secrets in code secret-high-entropy-token repo/biomni/tool/biochemistry.py:1038
    High-entropy token-like string (may be an id, hash or a credential) (detector / deny-list definition)
    __AUTHOR_SIGNATURE__ = "9a7f…URE"
    detector
  • low Secrets in code secret-high-entropy-token repo/biomni/tool/bioengineering.py:1399
    High-entropy token-like string (may be an id, hash or a credential) (detector / deny-list definition)
    __AUTHOR_SIGNATURE__ = "9a7f…URE"
    detector
  • low Secrets in code secret-high-entropy-token repo/biomni/tool/bioimaging.py:1406
    High-entropy token-like string (may be an id, hash or a credential) (detector / deny-list definition)
    __AUTHOR_SIGNATURE__ = "9a7f…URE"
    detector
  • low Secrets in code secret-high-entropy-token repo/biomni/tool/biophysics.py:525
    High-entropy token-like string (may be an id, hash or a credential) (detector / deny-list definition)
    __AUTHOR_SIGNATURE__ = "9a7f…URE"
    detector
  • low Secrets in code secret-high-entropy-token repo/biomni/tool/cancer_biology.py:1304
    High-entropy token-like string (may be an id, hash or a credential) (detector / deny-list definition)
    __AUTHOR_SIGNATURE__ = "9a7f…URE"
    detector
  • low Secrets in code secret-high-entropy-token repo/biomni/tool/cell_biology.py:754
    High-entropy token-like string (may be an id, hash or a credential) (detector / deny-list definition)
    __AUTHOR_SIGNATURE__ = "9a7f…URE"
    detector
  • low Secrets in code secret-high-entropy-token repo/biomni/tool/database.py:4986
    High-entropy token-like string (may be an id, hash or a credential) (detector / deny-list definition)
    __AUTHOR_SIGNATURE__ = "9a7f…URE"
    detector
  • low Secrets in code secret-high-entropy-token repo/biomni/tool/example_mcp_tools/pubmed_mcp.py:50
    High-entropy token-like string (may be an id, hash or a credential) (detector / deny-list definition)
    __AUTHOR_SIGNATURE__ = "9a7f…URE"
    detector
  • low Secrets in code secret-high-entropy-token repo/biomni/tool/genetics.py:1684
    High-entropy token-like string (may be an id, hash or a credential) (detector / deny-list definition)
    __AUTHOR_SIGNATURE__ = "9a7f…URE"
    detector
  • low Secrets in code secret-high-entropy-token repo/biomni/tool/genomics.py:2771
    High-entropy token-like string (may be an id, hash or a credential) (detector / deny-list definition)
    __AUTHOR_SIGNATURE__ = "9a7f…URE"
    detector
  • low Secrets in code secret-high-entropy-token repo/biomni/tool/glycoengineering.py:158
    High-entropy token-like string (may be an id, hash or a credential) (detector / deny-list definition)
    __AUTHOR_SIGNATURE__ = "9a7f…URE"
    detector
  • low Secrets in code secret-high-entropy-token repo/biomni/tool/immunology.py:1984
    High-entropy token-like string (may be an id, hash or a credential) (detector / deny-list definition)
    __AUTHOR_SIGNATURE__ = "9a7f…URE"
    detector
  • low Secrets in code secret-high-entropy-token repo/biomni/tool/lab_automation.py:222
    High-entropy token-like string (may be an id, hash or a credential) (quoted — discussed, not commanded)
    - Use hami…ter instead of HTF (deprecated). Note the capital L in uL.
    quoted
  • low Secrets in code secret-high-entropy-token repo/biomni/tool/lab_automation.py:666
    High-entropy token-like string (may be an id, hash or a credential) (detector / deny-list definition)
    __AUTHOR_SIGNATURE__ = "9a7f…URE"
    detector
  • low Secrets in code secret-high-entropy-token repo/biomni/tool/literature.py:415
    High-entropy token-like string (may be an id, hash or a credential) (detector / deny-list definition)
    __AUTHOR_SIGNATURE__ = "9a7f…URE"
    detector
  • low Secrets in code secret-high-entropy-token repo/biomni/tool/microbiology.py:1630
    High-entropy token-like string (may be an id, hash or a credential) (detector / deny-list definition)
    __AUTHOR_SIGNATURE__ = "9a7f…URE"
    detector
  • low Secrets in code secret-high-entropy-token repo/biomni/tool/molecular_biology.py:2234
    High-entropy token-like string (may be an id, hash or a credential) (detector / deny-list definition)
    __AUTHOR_SIGNATURE__ = "9a7f…URE"
    detector
  • low Secrets in code secret-high-entropy-token repo/biomni/tool/pathology.py:1046
    High-entropy token-like string (may be an id, hash or a credential) (detector / deny-list definition)
    __AUTHOR_SIGNATURE__ = "9a7f…URE"
    detector
  • low Secrets in code secret-high-entropy-token repo/biomni/tool/pharmacology.py:3804
    High-entropy token-like string (may be an id, hash or a credential) (detector / deny-list definition)
    __AUTHOR_SIGNATURE__ = "9a7f…URE"
    detector
  • low Secrets in code secret-high-entropy-token repo/biomni/tool/physiology.py:1371
    High-entropy token-like string (may be an id, hash or a credential) (detector / deny-list definition)
    __AUTHOR_SIGNATURE__ = "9a7f…URE"
    detector
  • low Secrets in code secret-high-entropy-token repo/biomni/tool/protocols.py:182
    High-entropy token-like string (may be an id, hash or a credential) (detector / deny-list definition)
    __AUTHOR_SIGNATURE__ = "9a7f…URE"
    detector

…and 19 more

Files scanned: 79. Evidence is masked. Grey chips explain why severity was lowered.

Against the Agent Skills spec

  • error frontmatter SKILL.md: no YAML frontmatter block found
  • error name-missing SKILL.md: frontmatter has no `name`
  • error description-missing SKILL.md: no `description` — the skill can never trigger

Process rating: all ten parameters 46/100

  • 0Result and completion. Does not say what the result is
  • 0When it triggers. No condition that starts the skill
  • 0Inputs and preconditions. Does not say what the process needs to start
  • 0Failures and branches. Linear process with no failure handling
  • 60Tools and files. Uses tools (python) that frontmatter does not declare
  • 100Steps. 14 steps
  • 100Consistency. Name and required fields are in place
  • 100Execution cost. Instruction body is 470 tokens
  • 100Running it twice. No mutating operations
  • 100Progress reporting. Reports progress
  • medium Safety rules and hard prohibitions inside a skill: they belong in the system prompt, here they protect nothing

Everything here is measured from the skill text rather than judged by a model, so the numbers are checkable. A parameter weighs more when it is a more common reason for the process to stall.

Quality signals

  • +5Description has no quoted example phrases that should trigger the skill
  • +4Description does not say when NOT to use the skill (false activations)
  • +3Description length 0: 120–800 characters recommended
  • +3Output format is not stated: the model decides each time
  • +4No input/output examples
  • +1No license
  • +2Single-language instructions
  • +4Structure: 11 headings
  • +3Step-by-step instructions: 14 items

Quality base 70; lint remarks subtract, signals add up to 100. Result: 0.