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BB lobster-bioinformatics

Run bioinformatics analyses using Lobster AI - single-cell RNA-seq, bulk RNA-seq, literature mining, dataset discovery, quality control, and visualization. Use when analyzing genomics data, searching for papers/datasets, or working with H5AD, CSV, GEO/SRA accessions, or biological data. Requires lobster-ai package installed.

FreedomIntelligence/OpenClaw-Medical-Skills Agent Skills author: FreedomIntelligence 3 files · 1 script body ≈ 2 378 tokens Open the sourcegithub.com↗ analyzed 15 h ago

Run bioinformatics analyses using Lobster AI - single-cell RNA-seq, bulk RNA-seq, literature mining, dataset discovery, quality control, and visualization.

As a process B 75/100 · Nearly there — no weak spots found

AnalyzerGitHubData and analyticstype and topics are labelled automatically from the skill text
Runs in: Claude / Claude Code ChatGPT / Codex Gemini CLI Cursor GitHub Copilot / VS Code Qwen Code Kimi Code CLI Z.ai (GLM) DeepSeek (Deep Code) Mistral Vibe LangChain (deepagents) OpenClaw Goose OpenCode
JSON
Technical rating
B
91/100
safety, quality, tests
Safety 60%
94
Quality 40%
87
Run on models
none yet
Process rating
B
75/100
Nearly there
Failures and branches w 10
50
Tools and files w 18
60
Result and completion w 14
60
the three weakest of ten parameters · all ten

What is at stake

Medium-severity findings: the skill is probably honest, but read what alarmed the scanner.

Dangerous commands medium severity

Below is the worst case for this category. The finding here is medium: the guard saw a sign, not a proof.

If you install

The skill contains commands that delete files, rewrite disks or execute code fetched from the network. The agent may run them without asking if it believes the instructions require it.

For the author

Replace destructive commands with safe equivalents that ask for confirmation, scope them to one folder, and stop piping curl into a shell: pin a version and a checksum.

How to improve

    For the model run — optional
    • Your own cases (evals/evals.json, 4–6 real requests with expected answers): the full check would then run those instead of a model-drafted suite.
    • A spec.yaml with trigger phrases and assertions — a behaviour contract for CI; `skilltest init` writes a template.

    Guard findings · 2

    ✓ No critical or high findings

    Medium and low: 2
    • medium Dangerous commands cmd-pipe-to-shell-known-host README.md:14
      Pipe-to-shell installer from a well-known host (still executes remote code)
      curl -fsSL https://raw.githubusercontent.com/the-omics-os/lobster-local/main/claude-skill/install.sh | bash
    • low Dangerous commands cmd-pipe-to-shell-known-host install.sh:3
      Pipe-to-shell installer from a well-known host (still executes remote code) (code comment)
      # Usage: curl -fsSL https://raw.githubusercontent.com/the-omics-os/lobster-local/main/claude-skill/install.sh | bash
      comment

    Files scanned: 3. Evidence is masked. Grey chips explain why severity was lowered.

    Against the Agent Skills spec

    ✓ No remarks against the Agent Skills spec

    Process rating: all ten parameters 75/100

    • 50Failures and branches. 0 branches, has a failure section
    • 60Tools and files. Uses tools (bash, python) that frontmatter does not declare
    • 60Result and completion. Output format stated, no completion criterion
    • 70When it triggers. States when to use, but not when not to
    • 70Inputs and preconditions. Inputs and preconditions are listed
    • 100Steps. 49 steps
    • 100Consistency. Name and required fields are in place
    • 100Execution cost. Instruction body is 2378 tokens
    • 100Running it twice. No mutating operations
    • 100Progress reporting. Reports progress
    • low 12 top-level sections: this looks like several domains in one skill

    Everything here is measured from the skill text rather than judged by a model, so the numbers are checkable. A parameter weighs more when it is a more common reason for the process to stall.

    Quality signals

    • +5Description has no quoted example phrases that should trigger the skill
    • +4Description does not say when NOT to use the skill (false activations)
    • +1No license
    • +2Single-language instructions
    • +3Description length 326: enough signal without eating the budget
    • +4Structure: 16 headings
    • +3Step-by-step instructions: 49 items
    • +3Output format is stated explicitly
    • +4Has examples (19 code blocks)

    Quality base 70; lint remarks subtract, signals add up to 100. Result: 87.