BD protein-design-workflow
End-to-end guidance for protein design pipelines. Use this skill when: (1) Starting a new protein design project, (2) Need step-by-step workflow guidance, (3) Understanding the full design pipeline, (4) Planning compute resources and timelines, (5) Integrating multiple design tools. For tool selection, use binder-design. For QC thresholds, use protein-qc.
End-to-end guidance for protein design pipelines.
As a process D 48/100 · Unfinished process — weak spots: result and completion, when it triggers, inputs and preconditions
How to improve
- For Hermes the description must be one sentence under 60 characters; move the conditions to a "When to Use" section.
- Your own cases (evals/evals.json, 4–6 real requests with expected answers): the full check would then run those instead of a model-drafted suite.
- A spec.yaml with trigger phrases and assertions — a behaviour contract for CI; `skilltest init` writes a template.
Guard findings · 0
✓ No critical or high findings
Files scanned: 3. Evidence is masked. Grey chips explain why severity was lowered.
Against the Agent Skills spec
- warning
description-long-hermesdescription is 358 chars; the Hermes authoring standard requires ≤ 60 (one sentence, ending with a period)
Process rating: all ten parameters 48/100
- 0Result and completion. Does not say what the result is
- 0Inputs and preconditions. Does not say what the process needs to start
- 0Failures and branches. Linear process with no failure handling
- 0Progress reporting. Says nothing while it works
- 20When it triggers. No condition that starts the skill
- 30Running it twice. 1 mutating operations with no state check
- 85Steps. 28 steps, 1 vague phrases
- 100Tools and files. No external tools needed
- 100Consistency. Name and required fields are in place
- 100Execution cost. Instruction body is 1083 tokens
- low 10 top-level sections: this looks like several domains in one skill
Everything here is measured from the skill text rather than judged by a model, so the numbers are checkable. A parameter weighs more when it is a more common reason for the process to stall.
Quality signals
- +5Description has no quoted example phrases that should trigger the skill
- +4Description does not say when NOT to use the skill (false activations)
- +3Output format is not stated: the model decides each time
- -42 reference files, but SKILL.md never points to them: the model will not open them
- +2Single-language instructions
- +3Description length 357: enough signal without eating the budget
- +4Structure: 28 headings
- +3Step-by-step instructions: 28 items
- +4Has examples (8 code blocks)
- +1License stated
Quality base 70; lint remarks subtract, signals add up to 100. Result: 75.