CD single-cell-clustering-and-batch-correction-with-omicverse
Guide Claude through omicverse's single-cell clustering workflow, covering preprocessing, QC, multimethod clustering, topic modeling, cNMF, and cross-batch integration as demonstrated in t_cluster.ipynb and t_single_batch.ipynb.
Guide Claude through omicverse's single-cell clustering workflow, covering preprocessing, QC, multimethod clustering, topic modeling, cNMF, and cross-batch…
As a process D 44/100 · Unfinished process — References files that are not bundled: ../../omicverse_guide/docs/Tutorials-single/t_cluster.ipynb, ../../omicverse_guide/docs/Tutorials-single/t_single_batch.ipynb
How to improve
- Say in the description WHEN to use the skill ("use when…", example requests): that is the agent's main cue.
- The text references files that are not there: add them or drop the references.
- Your own cases (evals/evals.json, 4–6 real requests with expected answers): the full check would then run those instead of a model-drafted suite.
- A spec.yaml with trigger phrases and assertions — a behaviour contract for CI; `skilltest init` writes a template.
Guard findings · 0
✓ No critical or high findings
Files scanned: 2. Evidence is masked. Grey chips explain why severity was lowered.
Against the Agent Skills spec
- warning
description-no-whendescription does not say WHEN to use the skill (no "use when") - warning
missing-refreference to a missing file: ../../omicverse_guide/docs/Tutorials-single/t_cluster.ipynb - warning
missing-refreference to a missing file: ../../omicverse_guide/docs/Tutorials-single/t_single_batch.ipynb - note
frontmatter-keyunknown frontmatter key "title"
Process rating: all ten parameters 44/100
- 0Tools and files. 2 referenced file(s) missing: ../../omicverse_guide/docs/Tutorials-single/t_cluster.ipynb, ../../omicverse_guide/docs/Tutorials-single/t_single_batch.ipynb
- 0Result and completion. Does not say what the result is
- 0Failures and branches. Linear process with no failure handling
- 30Running it twice. 2 mutating operations with no state check
- 40Consistency. Frontmatter name (single-cell-clustering-and-batch-correction-with-omicverse) differs from the folder (single-clustering)
- 70When it triggers. States when to use, but not when not to
- 70Inputs and preconditions. Inputs and preconditions are listed
- 100Steps. 37 steps
- 100Execution cost. Instruction body is 1923 tokens
- 100Progress reporting. Reports progress
Everything here is measured from the skill text rather than judged by a model, so the numbers are checkable. A parameter weighs more when it is a more common reason for the process to stall.
Quality signals
- +5Description has no quoted example phrases that should trigger the skill
- +4Description does not say when NOT to use the skill (false activations)
- +3Output format is not stated: the model decides each time
- +1No license
- +2Single-language instructions
- +3Description length 228: enough signal without eating the budget
- +4Structure: 5 headings
- +3Step-by-step instructions: 37 items
- +4Has examples (1 code blocks)
Quality base 70; lint remarks subtract, signals add up to 100. Result: 62.