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BC fair-esm2

Embed proteins with Meta AI's ESM-2 (`fair-esm` package). Use this skill when: (1) Extracting per-residue or per-sequence embeddings for downstream ML, (2) Masked-LM likelihood / mutation effect scoring, (3) Contact prediction from a sequence.

aipoch/open-science Agent Skills author: aipoch Apache-2.0 1 file body ≈ 1 326 tokens Open the sourcegithub.com↗ analyzed 2 d ago

Embed proteins with Meta AI's ESM-2 (fair-esm package).

As a process C 50/100 · Has gaps — weak spots: steps, when it triggers, running it twice

ReferenceAI and agentstype and topics are labelled automatically from the skill text
Runs in: Claude / Claude Code ChatGPT / Codex Gemini CLI Cursor GitHub Copilot / VS Code Qwen Code Kimi Code CLI Z.ai (GLM) DeepSeek (Deep Code) Mistral Vibe LangChain (deepagents) OpenClaw Goose OpenCode
JSON
Technical rating
B
94/100
safety, quality, tests
Safety 60%
100
Quality 40%
84
Run on models
none yet
Process rating
C
50/100
Has gaps
Steps w 15
0
Progress reporting w 2
0
When it triggers w 12
20
the three weakest of ten parameters · all ten

How to improve

    For the model run — optional
    • Your own cases (evals/evals.json, 4–6 real requests with expected answers): the full check would then run those instead of a model-drafted suite.
    • A spec.yaml with trigger phrases and assertions — a behaviour contract for CI; `skilltest init` writes a template.

    Guard findings · 0

    ✓ No critical or high findings

    Files scanned: 1. Evidence is masked. Grey chips explain why severity was lowered.

    Against the Agent Skills spec

    • note frontmatter-key unknown frontmatter key "requirements"

    Process rating: all ten parameters 50/100

    • 0Steps. Prose only: no discrete steps
    • 0Progress reporting. Says nothing while it works
    • 20When it triggers. No condition that starts the skill
    • 30Running it twice. 2 mutating operations with no state check
    • 50Failures and branches. 0 branches, has a failure section
    • 60Tools and files. Uses tools (python) that frontmatter does not declare
    • 60Result and completion. Output format stated, no completion criterion
    • 70Inputs and preconditions. Inputs and preconditions are listed
    • 100Consistency. Name and required fields are in place
    • 100Execution cost. Instruction body is 1326 tokens

    Everything here is measured from the skill text rather than judged by a model, so the numbers are checkable. A parameter weighs more when it is a more common reason for the process to stall.

    Quality signals

    • +5Description has no quoted example phrases that should trigger the skill
    • +4Description does not say when NOT to use the skill (false activations)
    • +3No numbered steps or checklist
    • +2Single-language instructions
    • +3Description length 243: enough signal without eating the budget
    • +4Structure: 10 headings
    • +3Output format is stated explicitly
    • +4Has examples (5 code blocks)
    • +1License stated

    Quality base 70; lint remarks subtract, signals add up to 100. Result: 84.