BD bioinformatics-analysis
标准化生物信息学分析流程。当用户提出以下任务时激活：(1) 测序数据分析（RNA-seq、ChIP-seq、WGS等），(2) 差异表达分析，(3) 通路/富集分析，(4) 组学数据可视化，(5) 统计检验，(6) 任何需要调用成熟生信工具而非编写Python/R算法代码的分析任务。核心原则：优先调用工具，记录shell脚本过程，结果用Rmarkdown统计可视化，确保分析可重复。
标准化生物信息学分析流程。当用户提出以下任务时激活：(1) 测序数据分析（RNA-seq、ChIP-seq、WGS等），(2) 差异表达分析，(3) 通路/富集分析，(4) 组学数据可视化，(5) 统计检验，(6)…
As a process D 41/100 · Unfinished process — weak spots: result and completion, when it triggers, inputs and preconditions
How to improve
- Say in the description WHEN to use the skill ("use when…", example requests): that is the agent's main cue.
- Your own cases (evals/evals.json, 4–6 real requests with expected answers): the full check would then run those instead of a model-drafted suite.
- A spec.yaml with trigger phrases and assertions — a behaviour contract for CI; `skilltest init` writes a template.
Guard findings · 0
✓ No critical or high findings
Files scanned: 5. Evidence is masked. Grey chips explain why severity was lowered.
Against the Agent Skills spec
- warning
description-no-whendescription does not say WHEN to use the skill (no "use when")
Process rating: all ten parameters 41/100
- 0Result and completion. Does not say what the result is
- 0Inputs and preconditions. Does not say what the process needs to start
- 0Failures and branches. Linear process with no failure handling
- 0Progress reporting. Says nothing while it works
- 20When it triggers. No condition that starts the skill
- 40Consistency. Frontmatter name (bioinformatics-analysis) differs from the folder (bioinfo-style)
- 60Tools and files. Uses tools (bash) that frontmatter does not declare
- 100Steps. 12 steps
- 100Execution cost. Instruction body is 883 tokens
- 100Running it twice. No mutating operations
Everything here is measured from the skill text rather than judged by a model, so the numbers are checkable. A parameter weighs more when it is a more common reason for the process to stall.
Quality signals
- +5Description has no quoted example phrases that should trigger the skill
- +4Description does not say when NOT to use the skill (false activations)
- +3Output format is not stated: the model decides each time
- -31 of 1 scripts are never mentioned in SKILL.md
- +1No license
- +2Single-language instructions
- +3Description length 192: enough signal without eating the budget
- +4Structure: 15 headings
- +3Step-by-step instructions: 12 items
- +4Has examples (10 code blocks)
- +4Reference files are cited in the instructions (2 of 2)
Quality base 70; lint remarks subtract, signals add up to 100. Result: 73.