SKILLEMALL.ai
GitHub ↗ RU Sign in

AC protein-sequence-msa

Performs multiple sequence alignment of proteins with EBI Clustal Omega. Use when you need to align multiple sequences to assess similarity, domain conservation, or key residue conservation. Supports up to 4000 sequences and a maximum file size of 4 MB. Do not use to search for homologous proteins in a database (use MMseqs2, BLAST), align non-protein sequences (DNA, RNA), perform structural alignment (use Foldseek, PyMOL), or if you only have a single sequence.

google-deepmind/science-skills Agent Skills author: google-deepmind 2 files · 1 script body ≈ 1 396 tokens Open the sourcegithub.com↗ analyzed 2 h ago

Performs multiple sequence alignment of proteins with EBI Clustal Omega.

As a process C 53/100 · Has gaps — weak spots: result and completion, failures and branches, consistency

AnalyzerData and analyticstype and topics are labelled automatically from the skill text
Runs in: Claude / Claude Code ChatGPT / Codex Gemini CLI Cursor GitHub Copilot / VS Code Qwen Code Kimi Code CLI Z.ai (GLM) DeepSeek (Deep Code) Mistral Vibe LangChain (deepagents) OpenClaw Goose OpenCode
JSON
Technical rating
A
96/100
safety, quality, tests
Safety 60%
100
Quality 40%
91
Run on models
none yet
Process rating
C
53/100
Has gaps
Result and completion w 14
0
Failures and branches w 10
0
Progress reporting w 2
0
the three weakest of ten parameters · all ten

How to improve

    For the model run — optional
    • Your own cases (evals/evals.json, 4–6 real requests with expected answers): the full check would then run those instead of a model-drafted suite.
    • A spec.yaml with trigger phrases and assertions — a behaviour contract for CI; `skilltest init` writes a template.

    Guard findings · 0

    ✓ No critical or high findings

    Files scanned: 2. Evidence is masked. Grey chips explain why severity was lowered.

    Against the Agent Skills spec

    ✓ No remarks against the Agent Skills spec

    Process rating: all ten parameters 53/100

    • 0Result and completion. Does not say what the result is
    • 0Failures and branches. Linear process with no failure handling
    • 0Progress reporting. Says nothing while it works
    • 40Consistency. Frontmatter name (protein-sequence-msa) differs from the folder (protein_sequence_msa)
    • 50When it triggers. No condition that starts the skill
    • 60Tools and files. Uses tools (bash, web, python) that frontmatter does not declare
    • 70Inputs and preconditions. Inputs and preconditions are listed
    • 100Steps. 12 steps
    • 100Execution cost. Instruction body is 1396 tokens
    • 100Running it twice. Mutating operations check current state

    Everything here is measured from the skill text rather than judged by a model, so the numbers are checkable. A parameter weighs more when it is a more common reason for the process to stall.

    Quality signals

    • +5Description has no quoted example phrases that should trigger the skill
    • +3Output format is not stated: the model decides each time
    • +1No license
    • +2Single-language instructions
    • +4Description says when NOT to use the skill
    • +3Description length 465: enough signal without eating the budget
    • +4Structure: 5 headings
    • +3Step-by-step instructions: 12 items
    • +4Has examples (2 code blocks)
    • +3All 1 scripts are documented

    Quality base 70; lint remarks subtract, signals add up to 100. Result: 91.