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BC anndata

Data structure for annotated matrices in single-cell analysis. Use when working with .h5ad files or integrating with the scverse ecosystem. This is the data format skill—for analysis workflows use scanpy; for probabilistic models use scvi-tools; for population-scale queries use cellxgene-census.

synthetic-sciences/OpenScience Hermes author: synthetic-sciences Apache-2.0 6 files body ≈ 2 630 tokens Open the sourcegithub.com↗ analyzed 5 d ago

Data structure for annotated matrices in single-cell analysis.

As a process C 51/100 · Has gaps — weak spots: result and completion, when it triggers, inputs and preconditions

AnalyzerData and analyticstype and topics are labelled automatically from the skill text
Runs in: Hermes Agent
JSON
Technical rating
B
93/100
safety, quality, tests
Safety 60%
100
Quality 40%
82
Run on models
none yet
Process rating
C
51/100
Has gaps
Result and completion w 14
0
Inputs and preconditions w 11
0
Progress reporting w 2
0
the three weakest of ten parameters · all ten

How to improve

  1. For Hermes the description must be one sentence under 60 characters; move the conditions to a "When to Use" section.
For the model run — optional
  • Your own cases (evals/evals.json, 4–6 real requests with expected answers): the full check would then run those instead of a model-drafted suite.
  • A spec.yaml with trigger phrases and assertions — a behaviour contract for CI; `skilltest init` writes a template.

Guard findings · 0

✓ No critical or high findings

Files scanned: 6. Evidence is masked. Grey chips explain why severity was lowered.

Against the Agent Skills spec

  • warning description-long-hermes description is 296 chars; the Hermes authoring standard requires ≤ 60 (one sentence, ending with a period)
  • note frontmatter-key unknown frontmatter key "dependencies"

Process rating: all ten parameters 51/100

  • 0Result and completion. Does not say what the result is
  • 0Inputs and preconditions. Does not say what the process needs to start
  • 0Progress reporting. Says nothing while it works
  • 20When it triggers. No condition that starts the skill
  • 50Failures and branches. 0 branches, has a failure section
  • 60Tools and files. Uses tools (python) that frontmatter does not declare
  • 100Steps. 44 steps
  • 100Consistency. Name and required fields are in place
  • 100Execution cost. Instruction body is 2630 tokens
  • 100Running it twice. No mutating operations

Everything here is measured from the skill text rather than judged by a model, so the numbers are checkable. A parameter weighs more when it is a more common reason for the process to stall.

Quality signals

  • +5Description has no quoted example phrases that should trigger the skill
  • +4Description does not say when NOT to use the skill (false activations)
  • +3Output format is not stated: the model decides each time
  • +2Single-language instructions
  • +3Description length 296: enough signal without eating the budget
  • +4Structure: 28 headings
  • +3Step-by-step instructions: 44 items
  • +4Has examples (18 code blocks)
  • +4Reference files are cited in the instructions (5 of 5)
  • +1License stated

Quality base 70; lint remarks subtract, signals add up to 100. Result: 82.