SKILLEMALL.ai

CC atomistic-workflows

Sets up and reports atomistic calculations so they are reproducible and converged, covering ASE Atoms, calculators, optimizers and MD drivers, pymatgen structures, symmetry analysis and the Materials Project API, LAMMPS and GROMACS input basics for molecular dynamics, convergence tests for k-points, plane-wave cutoffs and timesteps, the unit system each code uses, energy-minimization stopping criteria, and archiving of exact input files. Use for DFT, classical or machine-learned potential simulations of molecules, crystals, surfaces and liquids; use molecular-dynamics for biomolecular trajectory analysis and pymatgen for detailed library usage.

synthetic-sciences/OpenScience Agent Skills author: synthetic-sciences Apache-2.0 1 file body ≈ 1 724 tokens Open the sourcegithub.com↗ analyzed 5 d ago

Sets up and reports atomistic calculations so they are reproducible and converged, covering ASE Atoms, calculators, optimizers and MD drivers, pymatgen…

As a process C 53/100 · Has gaps — weak spots: result and completion, when it triggers, inputs and preconditions

ProcedureSoftware developmentData and analyticstype and topics are labelled automatically from the skill text
JSON
Technical rating
C
89/100
safety, quality, tests
Safety 60%
95
Quality 40%
80
Run on models
none yet
Process rating
C
53/100
Has gaps
Result and completion w 14
0
Inputs and preconditions w 11
0
Failures and branches w 10
0
the three weakest of ten parameters · all ten

What is at stake

Medium-severity findings: the skill is probably honest, but read what alarmed the scanner.

Broad scope medium severity

Below is the worst case for this category. The finding here is medium: the guard saw a sign, not a proof.

If you install

The skill asks for more than the task needs: broad tool access, credential environment variables, binaries. Every extra permission widens the damage from a mistake or a compromise.

For the author

Narrow allowed-tools and the variable list to the minimum; replace binaries with readable sources or scripts.

How to improve

    For the model run — optional
    • Your own cases (evals/evals.json, 4–6 real requests with expected answers): the full check would then run those instead of a model-drafted suite.
    • A spec.yaml with trigger phrases and assertions — a behaviour contract for CI; `skilltest init` writes a template.

    Guard findings · 1

    ✓ No critical or high findings

    Medium and low: 1
    • medium Broad scope meta-broad-allowed-tools SKILL.md:1
      Broad tool permissions pre-approved: Bash
      allowed-tools: Read Write Bash python

    Files scanned: 1. Evidence is masked. Grey chips explain why severity was lowered.

    Against the Agent Skills spec

    • note frontmatter-key unknown frontmatter key "summary"

    Process rating: all ten parameters 53/100

    • 0Result and completion. Does not say what the result is
    • 0Inputs and preconditions. Does not say what the process needs to start
    • 0Failures and branches. Linear process with no failure handling
    • 20When it triggers. No condition that starts the skill
    • 30Running it twice. 1 mutating operations with no state check
    • 100Tools and files. Tools declared in frontmatter
    • 100Steps. 20 steps
    • 100Consistency. Name and required fields are in place
    • 100Execution cost. Instruction body is 1724 tokens
    • 100Progress reporting. Reports progress

    Everything here is measured from the skill text rather than judged by a model, so the numbers are checkable. A parameter weighs more when it is a more common reason for the process to stall.

    Quality signals

    • +5Description has no quoted example phrases that should trigger the skill
    • +4Description does not say when NOT to use the skill (false activations)
    • +3Output format is not stated: the model decides each time
    • +4No input/output examples
    • +2Single-language instructions
    • +3Description length 652: enough signal without eating the budget
    • +4Structure: 8 headings
    • +3Step-by-step instructions: 20 items
    • +1License stated

    Quality base 70; lint remarks subtract, signals add up to 100. Result: 80.