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AC structure-prediction

Protein structure prediction from sequence. ESMFold-based, single GPU, no MSA needed. Predicts 3D structures with pLDDT confidence scores for drug discovery targets.

synthetic-sciences/OpenScience Hermes author: synthetic-sciences Apache-2.0 6 files · 4 scripts body ≈ 2 004 tokens Open the sourcegithub.com↗ analyzed 5 d ago

Protein structure prediction from sequence.

As a process C 55/100 · Has gaps — weak spots: when it triggers, inputs and preconditions, failures and branches

ProcedureData and analyticsAI and agentstype and topics are labelled automatically from the skill text
Runs in: Hermes Agent
JSON
Technical rating
A
95/100
safety, quality, tests
Safety 60%
100
Quality 40%
88
Run on models
none yet
Process rating
C
55/100
Has gaps
Inputs and preconditions w 11
0
Failures and branches w 10
0
Progress reporting w 2
0
the three weakest of ten parameters · all ten

How to improve

  1. For Hermes the description must be one sentence under 60 characters; move the conditions to a "When to Use" section.
For the model run — optional
  • Your own cases (evals/evals.json, 4–6 real requests with expected answers): the full check would then run those instead of a model-drafted suite.
  • A spec.yaml with trigger phrases and assertions — a behaviour contract for CI; `skilltest init` writes a template.

Guard findings · 0

✓ No critical or high findings

Files scanned: 6. Evidence is masked. Grey chips explain why severity was lowered.

Against the Agent Skills spec

  • warning description-long-hermes description is 165 chars; the Hermes authoring standard requires ≤ 60 (one sentence, ending with a period)
  • note frontmatter-key unknown frontmatter key "dependencies"

Process rating: all ten parameters 55/100

  • 0Inputs and preconditions. Does not say what the process needs to start
  • 0Failures and branches. Linear process with no failure handling
  • 0Progress reporting. Says nothing while it works
  • 20When it triggers. No condition that starts the skill
  • 60Tools and files. Uses tools (python) that frontmatter does not declare
  • 60Result and completion. Output format stated, no completion criterion
  • 100Steps. 36 steps
  • 100Consistency. Name and required fields are in place
  • 100Execution cost. Instruction body is 2004 tokens
  • 100Running it twice. No mutating operations

Everything here is measured from the skill text rather than judged by a model, so the numbers are checkable. A parameter weighs more when it is a more common reason for the process to stall.

Quality signals

  • +5Description has no quoted example phrases that should trigger the skill
  • +4Description does not say when NOT to use the skill (false activations)
  • +2Single-language instructions
  • +3Description length 165: enough signal without eating the budget
  • +4Structure: 13 headings
  • +3Step-by-step instructions: 36 items
  • +3Output format is stated explicitly
  • +4Has examples (5 code blocks)
  • +4Reference files are cited in the instructions (1 of 1)
  • +3All 4 scripts are documented
  • +1License stated

Quality base 70; lint remarks subtract, signals add up to 100. Result: 88.