Skill rating

Turn a folder of research PDFs into an Obsidian knowledge vault — consistently formatted literature notes with frontmatter, PDF embed links, and cross-referenced atomic concept notes. Use whenever the

Design and validity review for studies that benchmark one or more AI systems against a human-expert panel as the reference. Covers the evaluation question and arm definition, decoupled multi-dimension

Design or audit the uncertainty-quantification, out-of-distribution (OOD) detection, and selective-prediction layer of a medical-imaging model framed for deployment — so a clinical-use claim carries c

Design or audit the data-preparation stage of a medical-imaging model — DICOM/NIfTI intake, resampling and intensity normalisation, and the augmentation plan — so the pipeline is leakage-safe before m

Design or audit the clinical-validation study for an engineer-built medical-imaging model (segmentation, classification, or detection) before the validation report or manuscript is written. Covers pat

Replicate an existing cohort study's methodology on a different database. Extracts study design from a source paper, maps variables to the target DB via harmonization table, generates analysis code, a

Dataset version control for research reproducibility. Builds a deterministic content-hash manifest of a dataset (file SHA-256 + tabular schema + per-column value hashes), verifies a later copy against

Produce or audit the interpretability/explainability analysis of a medical-imaging model — Grad-CAM / Grad-CAM++ / attention-rollout / saliency / integrated-gradients — so it clears the rigor bar a re

Generate the documentation an engineer-built medical-imaging model must carry — a Model Card (Mitchell et al. 2019), a Datasheet for its dataset (Gebru et al. 2021), and a METRIC-informed data-quality

Design or audit a model-agnostic evaluation harness for an LLM or multimodal LLM on a clinical task (radiology report generation, visual question answering, clinical text extraction/classification) —

Render academic Markdown documents (English or Korean) to publication-quality PDF via pandoc + xelatex. Targets non-bibliography artifacts: research proposals, IRB cover letters, briefing handouts, an

Compute and report task-correct held-out metrics for a trained medical-imaging model — segmentation (Dice plus a boundary metric such as HD95 or NSD, per structure), classification (AUROC plus AUPRC a

Generate a reproducible, runnable PyTorch training repo for a medical-imaging task — segmentation, classification, detection, image-to-image synthesis, self-supervised pretraining, or fine-tuning a pr

Choose a model architecture for a medical-imaging research question before scaffolding. Maps the task (classification, segmentation, detection, transfer), modality and dimensionality, labelled-data sc

Profile a medical-imaging dataset before any modelling decision is made — the acquisition grid, voxel spacing and orientation spread, the intensity domain, which label values are actually present, how

End-to-end cross-national comparison study using KNHANES + NHANES + CHNS (or other parallel surveys). Variable harmonization, parallel weighted analysis, and comparison tables. Supports 2-country (KR+

Vet the concrete third-party model a study will be built on — this repository, this revision, this checkpoint — not the architecture family. Records a model dossier (source and version pin, licence an

Generate a citable data dictionary / codebook from a tabular dataset (CSV/TSV/Excel/Parquet/Stata/SAS). Profiles every variable — role, type, units placeholder, level frequencies, range/quantiles, mis

Generate N analysis scripts from a single methodology template × multiple exposure/outcome combinations. The "80-person team" pattern — same validated method, swap variables only. Produces batch R/Pyt

Interactive data profiling and cleaning assistant for medical research. Three-stage workflow (profile, flag, code-generate) with user approval gates at each step. Handles missing values, outliers, dup

Literature-grounded variable operationalization for observational research. Turns a data dictionary + research question into a citation-backed table of exposure/outcome/covariate definitions, cutoffs,

PubMed author profile analysis. Author name → PubMed fetch → study-type classification → visualization → strategy report → optional trajectory-archetype classification.

Research gap finder for longitudinal cohort databases. Profiles cohort strengths, matches PI expertise, scans literature saturation, and outputs ranked topic proposals with gap evidence. Works with an

Study design and validity review for radiology and medical AI research. Identifies analysis unit, cohort logic, leakage risks, comparator design, validation strategy, and reporting guideline fit befor

Diagnostic checklist for the MedSci Skills runtime. Verifies Python, R, Node, Claude Code, Git, Zotero, and configured MCP servers, and prints a pass/fail table with links to the right setup doc for a

De-identify clinical research data before LLM-assisted analysis. Standalone Python CLI detects PHI via regex + heuristics with 10 country locale packs (kr, us, jp, cn, de, uk, fr, ca, au, in). Interac

Journal recommendation engine for medical manuscripts. 2-pass matching against a curated public profile library plus any user-local private profiles, enriched with detailed write-paper profiles for to

Batch download open-access PDFs by DOI using legitimate OA APIs (Unpaywall, PMC, OpenAlex, Crossref). Optional PDF→Markdown conversion for token-efficient LLM analysis.

Academic English consistency linting and non-native (ESL) language polish for medical manuscripts. Deterministically flags abbreviation define-once violations, US/UK spelling drift, hyphen-vs-en-dash

Audit SSOT-to-submission drift and create journal submission manifests from canonical manuscript artifacts.

IRB/ethics committee research protocol generator. Produces 4 core sections (Background, Study Design, Sample Size, Statistical Plan) with full prose, plus 6 skeleton sections with TODO markers for ins

Intake and normalize a new radiology research project. Classifies project type, summarizes current state, identifies missing inputs, recommends next steps, and scaffolds lightweight project memory fil

Fill institutional Word form templates (.doc/.docx) for IRB protocols, ethics applications, grant proposals, and other structured research documents while preserving the original styles, table layouts

Grant and challenge proposal support for radiology and medical AI projects. Structures significance, innovation, approach, milestones, and consortium roles while keeping claims evidence-based and exec

Academic presentation preparation — paper-driven (journal club, grand rounds, seminar) and lecture/teaching decks (course material, workshop slides, conference talks). Analyzes source material, finds

Scaffold and draft medical/AI literature reviews (narrative, scoping PRISMA-ScR, or systematic). Asks for the spine axis, builds a 7-part skeleton with a required Intro scope/non-overlap block, a summ

Add a new journal to the MedSci Skills profile database. Extracts metadata from author guidelines, generates write-paper (detailed) and find-journal (compact) profiles in canonical format with quality

Offer your local changes back to the project — a journal profile you added, a checklist item you fixed, a skill you adapted to your department — as a pull request or an issue, without ever typing a gi

Meta-analysis topic discovery and feasibility assessment. Professor-first (profile → gap) or Topic-first (question → gap → co-author). Pre-protocol phase from idea to ranked topic list.

Systematic review and meta-analysis pipeline for medical research. Covers protocol registration (PROSPERO), search strategy, screening, data extraction, risk of bias assessment (QUADAS-2/ROBINS-I), st

Pre-submission self-review for the user's own manuscripts, applying a reviewer perspective. Systematic check across 10 categories with research-type branching. Outputs Anticipated Major/Minor Comments

Batch-generate per-author ICMJE Conflict of Interest Disclosure Forms (`coi_disclosure.docx`) for manuscript submission. Pre-fills all 13 disclosure items as "☒ None" + final certification ☒ using a s

Produce or audit a radiomics / tabular clinical-ML study — imaging or clinical features → any classical learner (penalised logistic [LASSO / ridge / elastic-net], SVM, k-NN, naive Bayes, LDA/QDA, deci

Medical AI paper optimization for AI search engines (Perplexity, ChatGPT web, Elicit, Consensus, SciSpace) and RAG-based literature tools. Applies when drafting or reviewing titles, abstracts, structu

Interactive sample size calculator for medical research. Decision-tree guided test selection, reproducible R/Python code, effect size interpretation, and IRB-ready justification text. Supports diagnos

Convert a personal agent skill into a distributable, open-source-ready skill. Runs PII audit, generalization, license compatibility check, cross-platform adapter review, and packaging workflow.

Cross-cutting reference manager for medical manuscripts. Single entry point for citation-key validation, journal-CSL pandoc rendering, manuscript ↔ DOCX cross-reference QC, marker conversion (``[N]``

Audit-only verification of manuscript references against PubMed and CrossRef. Detects fabricated or mismatched citations and writes qc/reference_audit.json. Does not modify references/ or refs.bib.

General-purpose research orchestrator. Routes ambiguous or multi-step requests to the right skill(s) from the medsci-skills bundle. Use when the user describes a research goal without naming a specifi

Detect and remove AI writing patterns from academic manuscripts and response-to-reviewers letters. Scans for 27 common AI-generated text patterns and rewrites flagged passages to sound naturally human